| ABV | Arboviral Infection (since 2017) |
| ACB | Acinetobacter Infection (since 2017) |
| ADV | Epidemic keratoconjunctivitis |
| BAN | Anthrax |
| BOR | Louse-borne relapsing fever |
| BOV | Bornavirus Infection (since 2023) |
| BPS | Pertussis (since April 2013) |
| BRU | Brucellosis |
| CAM | Campylobacteriosis |
| CAU | Candida auris Infection (since 2023) |
| CDF | Clostridioides difficile Infection |
| CHL | Ornithosis |
| CJK | CJK (Creutzfeld Jakob Disease) |
| CJV | Creutzfeldt Jakob disease, variant (vCJD ) |
| CKV | Chikungunya virus Disease (since 2017) |
| CLO | Botulism |
| COR | Diphtheria |
| COX | Q Fever |
| CRY | Cryptosporidiosis |
| CVD | Coronavirus Disease (Covid-19) (since 2020) |
| CVS | SARS (Severe acute respiratory syndrome) |
| DEN | Dengue fever |
| EBC | Enterobacterales Infection (since 2017) |
| EBV | Ebola haemorrhagic fever |
| ECO | E. coli enteritis |
| EHC | VTEC disease |
| FRT | Tularaemia |
| FSV | Tick-borne encephalitis (TBE) |
| GFV | Yellow fever |
| GIL | Giardiasis |
| HAV | Hepatitis A |
| HBV | Hepatitis B |
| HCV | Hepatitis C |
| HDV | Hepatitis D |
| HEV | Hepatitis E |
| HFA | Viral haemorrhagic fevers |
| HIN | Haemophilus influenzae disease, invasive |
| HTV | Hantavirus disease |
| HUS | HUS (Haemolytic uraemic syndrome), enteropathic |
| HXV | Hepatitis Non A-E |
| INV | Influenza |
| LEG | Legionaires‘ disease |
| LEP | Leptospirosis |
| LIS | Listeriosis |
| LSV | Lassa fever |
| MBV | Marburg virus disease (MVD) |
| MPV | Mumps (since April 2013) |
| MPX | Mpox (since 2022) |
| MRA | MRSA (Methicillin-resistant Staphylococcus aureus, invasive infection) (since July 2009) |
| MSV | Measles |
| MYL | Leprosy |
| MYT | Tuberculosis |
| NCV | Vibriosis (non-cholera) (since 2023) |
| NEI | Meningococcal disease, invasive |
| NOV | Noroviral gastroenteritis |
| OPX | Orthopoxvirus Infection (since 2023) |
| PKV | Smallpox |
| PLA | Malaria (since 2024) |
| POV | Poliomyelitis |
| RBV | Rabies |
| RIC | Epidemic typhus |
| RSV | Rotavirus Infection (since 2023) |
| RTV | Rotavirus gastroenteritis |
| RUN | Rubella, congenital (since April 2013) |
| RUV | Rubella (since April 2013) |
| SAL | Salmonellosis |
| SHI | Shigellosis |
| SPA | Paratyphus |
| SPN | Pneumococcal Disease (since 2020) |
| SSP | Subacute Sclerosing Panencephalitis (since 2023) |
| STY | Typhoid |
| TRI | Trichinellosis |
| VCH | Cholera |
| VZV | Chickenpox (since April 2013) |
| WNV | West Nile Virus Infection (since 2023) |
| YEN | Yersiniose |
| YPS | Plague |
| ZKV | Zika Virus Disease (since 2016) |